Tissue-specific epigenetic variation across brain and blood: functional annotation of the human brain methylome

MeDIP-seq brain data

The UCSC browser links below display the chromosome 15 SNRPN locus by default but allow you to navigate the entire genome. All of these analyses are based on the March 2006 (hg18) genome assembly. Selected tracks will appear cumulatively in the browser.

Individual 1

BA10 region ... MeDIP-seq-ucsc browser

BA8 region ... MeDIP-seq-ucsc browser

Entorhinal Cortex ... MeDIP-seq-ucsc browser

STG ... MeDIP-seq-ucsc browser

Cerebellum ... MeDIP-seq-ucsc browser

Whole Blood ... MeDIP-seq-ucsc browser

Individual 2

BA10 region ... MeDIP-seq-ucsc browser

BA8 region ... MeDIP-seq-ucsc browser

Entorhinal Cortex ... MeDIP-seq-ucsc browser

STG ... MeDIP-seq-ucsc browser

Visual Cortex... MeDIP-seq-ucsc browser

Cerebellum ... MeDIP-seq-ucsc browser

Whole Blood ... MeDIP-seq-ucsc browser

Individual 3

BA10 region ... MeDIP-seq-ucsc browser

BA8 region ... MeDIP-seq-ucsc browser

Entorhinal Cortex ... MeDIP-seq-ucsc browser

STG ... MeDIP-seq-ucsc browser

Cerebellum ... MeDIP-seq-ucsc browser

Average of Tissue Types

Average of BA9 tissues (from three samples) ... MeDIP-seq-ucsc browser

Average of BA8 tissues (from three samples) ... MeDIP-seq-ucsc browser

Average of BA10 tissues (from three samples) ... MeDIP-seq-ucsc browser

Average of Entorhinal Cortex tissues (from three samples) ... MeDIP-seq-ucsc browser

Average of STG tissues (from three samples) ... MeDIP-seq-ucsc browser

Average of Visual Cortex tissues (from one sample) ... MeDIP-seq-ucsc browser

Average of Cerebellum tissues (from three samples) ... MeDIP-seq-ucsc browser

Average of Whole Blood tissues (from two samples) ... MeDIP-seq-ucsc browser

MEDIPS Relative and Absolute Methlation Scores

Individual 1

MEDIPS BA10 region ... MeDIP-seq-ucsc browser

MEDIPS BA8 region ... MeDIP-seq-ucsc browser

MEDIPS Entorhinal cortex ... MeDIP-seq-ucsc browser

MEDIPS STG ... MeDIP-seq-ucsc browser

MEDIPS Cerebellum ... MeDIP-seq-ucsc browser

MEDIPS Whole Blood ... MeDIP-seq-ucsc browser

Individual 2

MEDIPS BA10 region ... MeDIP-seq-ucsc browser

MEDIPS BA8 region ... MeDIP-seq-ucsc browser

MEDIPS Entorhinal cortex ... MeDIP-seq-ucsc browser

MEDIPS STG ... MeDIP-seq-ucsc browser

MEDIPS Visual Cortex ... MeDIP-seq-ucsc browser

MEDIPS Cerebellum ... MeDIP-seq-ucsc browser

MEDIPS Whole Blood ... MeDIP-seq-ucsc browser

Individual 3

MEDIPS BA10 region ... MeDIP-seq-ucsc browser

MEDIPS BA8 region ... MeDIP-seq-ucsc browser

MEDIPS Entorhinal cortex ... MeDIP-seq-ucsc browser

MEDIPS STG ... MeDIP-seq-ucsc browser

MEDIPS Cerebellum ... MeDIP-seq-ucsc browser

Average of Tissue Types

Average of BA9 tissues (from three samples) ... MeDIP-seq-ucsc browser

Average of BA8 tissues (from three samples) ... MeDIP-seq-ucsc browser

Average of BA10 tissues (from three samples) ... MeDIP-seq-ucsc browser

Average of Entorhinal Cortex tissues (from three samples) ... MeDIP-seq-ucsc browser

Average of STG tissues (from three samples) ... MeDIP-seq-ucsc browser

Average of Visual Cortex tissues (from one sample) ... MeDIP-seq-ucsc browser

Average of Cerebellum tissues (from three samples) ... MeDIP-seq-ucsc browser

Average of Whole Blood tissues (from two samples) ... MeDIP-seq-ucsc browser

Normalised Scores for Sequencing Data

Individual 1

NORMALISED BA10 region ... MeDIP-seq-ucsc browser

NORMALISED BA8 region ... MeDIP-seq-ucsc browser

NORMALISED Entorhinal cortex ... MeDIP-seq-ucsc browser

NORMALISED STG ... MeDIP-seq-ucsc browser

NORMALISED Cerebellum ... MeDIP-seq-ucsc browser

NORMALISED Whole Blood ... MeDIP-seq-ucsc browser

Individual 2

NORMALISED BA10 region ... MeDIP-seq-ucsc browser

NORMALISED BA8 region ... MeDIP-seq-ucsc browser

NORMALISED Entorhinal cortex ... MeDIP-seq-ucsc browser

NORMALISED STG ... MeDIP-seq-ucsc browser

NORMALISED Visual Cortex ... MeDIP-seq-ucsc browser

NORMALISED Cerebellum ... MeDIP-seq-ucsc browser

NORMALISED Whole Blood ... MeDIP-seq-ucsc browser

Individual 3

NORMALISED BA10 region ... MeDIP-seq-ucsc browser

NORMALISED BA8 region ... MeDIP-seq-ucsc browser

NORMALISED Entorhinal cortex ... MeDIP-seq-ucsc browser

NORMALISED STG ... MeDIP-seq-ucsc browser

NORMALISED Cerebellum ... MeDIP-seq-ucsc browser

Average of Normalised Tissue Types

Average of BA9 tissues (from three samples) ... MeDIP-seq-ucsc browser

Average of BA8 tissues (from three samples) ... MeDIP-seq-ucsc browser

Average of BA10 tissues (from three samples) ... MeDIP-seq-ucsc browser

Average of Entorhinal Cortex tissues (from three samples) ... MeDIP-seq-ucsc browser

Average of STG tissues (from three samples) ... MeDIP-seq-ucsc browser

Average of Visual Cortex tissues (from one sample) ... MeDIP-seq-ucsc browser

Average of Cerebellum tissues (from three samples) ... MeDIP-seq-ucsc browser

Average of Whole Blood tissues (from two samples) ... MeDIP-seq-ucsc browser

BED files of Gene Features

CpG Island Type 1 (Promoters) ...

CpG Island Type 2 (Intragenic) ...

CpG Island Type 3 (3' end) ...

CpG Island Type 4 (Intergenic) ...

CpG Shore Upstream Type 1 (Promoters) ...

CpG Shore Upstream Type 2 (Intragenic) ...

CpG Shore Upstream Type 3 (3' end) ...

CpG Shore Upstream Type 4 (Intergenic) ...

CpG Shore Downstream Type 1 (Promoters) ...

CpG Shore Downstream Type 2 (Intragenic) ...

CpG Shore Downstream Type 3 (3' end) ...

CpG Shore Downstream Type 4 (Intergenic) ...

High CpG Density Promoters ...

Intermediate CpG Density Promoters ...

Low CpG Density Promoters ...

CDS (Gene Body) ...

Normalised MeDIP-seq values for all gene features

Features Table ...

CNV regions for BA9 and Cerebellum Samples of All Individuals

Individual 1 - BA9 Sample ... Individual 1 - BA9 Sample -ucsc browser

Individual 1 - Cerebellum Sample ... Individual 1 - Cerebellum Sample -ucsc browser

Individual 2 - BA9 Sample ... Individual 2 - BA9 Sample -ucsc browser

Individual 2 - Cerebellum Sample ... Individual 2 - Cerebellum Sample -ucsc browser

Individual 3 - BA9 Sample ... Individual 3 - BA9 Sample -ucsc browser

Individual 3 - Cerebellum Sample ... Individual 3 - Cerebellum Sample -ucsc browser